Instrumental variables: Handling experimental confounders

Mon Jun 23 2025

Ever tried to figure out if that new feature actually caused your conversion rate to jump, only to realize a dozen other things changed at the same time? Welcome to the messy world of confounding variables - the hidden gremlins that make causal analysis feel like detective work with half the clues missing.

The good news? There's a clever statistical trick called instrumental variables that can help you cut through the noise and get to the truth. It's not magic, but when you can't run a clean A/B test (ethics, feasibility, or just bad timing), it might be your best shot at understanding what's really driving your results.

Understanding confounding variables in experiments

Confounding variables are basically the party crashers of your experiment. They show up uninvited, influence both what you're testing and what you're measuring, and make it nearly impossible to tell what's actually causing what.

Think about it this way: you're testing whether a new onboarding flow improves retention. But during your test, marketing launches a huge campaign targeting power users. Now your retention is up, but was it the onboarding or the campaign? That campaign is your confounder, and it's messing with your results.

The problem gets worse because confounders can be sneaky. Sometimes they're obvious (like that marketing campaign), but often they're hidden - things like seasonal patterns, user self-selection, or even changes in the competitive landscape. The data science community on Reddit constantly debates these issues, with practitioners sharing war stories about confounders that completely invalidated months of work.

So what do you do about it? The gold standard is randomization - randomly assign users to test and control groups, and confounders should balance out. But what happens when you can't randomize? Maybe it's not ethical, maybe it's not practical, or maybe you're analyzing historical data where the ship has already sailed.

That's where things get interesting, and where instrumental variables enter the picture.

Instrumental variables as a solution to confounding

What are instrumental variables?

Instrumental variables (IVs) are like finding a backdoor into your causal question. Instead of trying to control for every possible confounder (good luck with that), you find something that affects your treatment but doesn't directly affect your outcome.

Let's make this concrete. Say you want to know if using a premium feature actually makes users more successful, or if successful users just tend to upgrade. You can't randomly force people to upgrade (that would be terrible for business), so you're stuck with observational data full of unmeasured confounders.

Here's where it gets clever: what if you had a promotion that randomly gave some users a discount on premium? The discount affects whether they upgrade, but it doesn't directly make them more successful. That discount is your instrumental variable - your backdoor to causation.

Why use instrumental variables?

The beauty of IVs is they let you do causal analysis when experiments aren't an option. This happens more than you'd think:

  • You're analyzing a competitor's feature impact using public data

  • Testing would be unethical (like randomly denying users important features)

  • The feature was already rolled out and you need to measure impact retroactively

  • There's selection bias you can't eliminate through design

Economists have been using this approach for decades. They'll use things like distance to college as an instrument for education levels, or weather as an instrument for attendance at outdoor events. In tech, we can get creative too - using things like:

  • Random notification timing as an instrument for feature discovery

  • Server-side bugs that temporarily limited access as "natural experiments"

  • Geographic rollouts as instruments for adoption patterns

The medical research community has particularly embraced IVs for situations where randomized trials would be impossible or unethical. They'll use genetic variations as instruments for lifestyle factors, or policy changes as instruments for treatment adoption.

Key assumptions for valid instrumental variable analysis

Here's where things get tricky. IVs aren't a free lunch - they come with assumptions that can be harder to satisfy than finding a unicorn in your backlog.

The big three assumptions you absolutely need:

1. Your instrument must be independent of confoundersThis is the independence assumption. Your instrument can't be correlated with any of the unmeasured stuff that's messing up your analysis. If you're using that discount as an instrument, it better be truly random - not targeted at users who are already likely to succeed.

2. The instrument only affects the outcome through the treatmentThis exclusion restriction is where many IV analyses fall apart. That discount should only affect user success by encouraging upgrades. If the discount itself makes users feel special and work harder, you're violating this assumption and your results are garbage.

3. The instrument must actually influence the treatmentA weak instrument is almost worse than no instrument. If your discount is so small nobody cares, or if it's offered to users who would never upgrade anyway, you're going to get wildly unreliable estimates. The econometrics folks test this obsessively with first-stage regressions, and for good reason.

There are other assumptions too - monotonicity (no "defiers" who do the opposite of what the instrument encourages) and SUTVA (one user's treatment doesn't affect another's outcomes). Violating any of these turns your sophisticated analysis into sophisticated nonsense.

The Reddit data science community loves to poke holes in IV analyses, and honestly, they're usually right to be skeptical. Every assumption is a potential weakness, and defending them requires both statistical rigor and deep domain knowledge.

Applying instrumental variables in practice and overcoming challenges

Finding good instruments is part art, part science, and part luck. Start with your domain knowledge - what naturally creates variation in your treatment that doesn't directly affect outcomes?

Here's how practitioners typically approach it:

  1. Brainstorm like crazy: List every source of variation in your treatment. Random bugs, rollout schedules, external shocks, policy changes, natural experiments. The team at Uber famously used surge pricing variations as instruments, while Airbnb has leveraged regulatory changes across cities.

  2. Test relentlessly: Just because something seems like a good instrument doesn't mean it is. Run your first-stage regressions to check relevance. Use the Sargan test and similar diagnostics to check validity. Do sensitivity analyses to see how your results change with different assumptions.

  3. Be transparent about limitations: Every IV analysis has weak points. Maybe your instrument isn't as random as you'd like. Maybe the exclusion restriction is debatable. Call these out explicitly - your credibility depends on it.

The biggest challenges you'll face:

  • Weak instruments that barely move the needle on your treatment variable

  • Exclusion restrictions that are theoretically shaky (critics will always find a story for why your instrument might have a direct effect)

  • Multiple testing issues when you try lots of potential instruments

  • Sample size requirements that are much larger than standard analyses

Machine learning is starting to help here. Tools can now automatically search for valid instruments in high-dimensional data, though you still need human judgment to assess whether they make sense. Causal discovery algorithms can suggest potential instruments based on data patterns, but they're complements to thinking, not substitutes.

The harsh reality? Many times you won't find a valid instrument. That's okay - it's better to admit uncertainty than to do bad causal inference. Sometimes the best solution is to combine IV estimates with other approaches, triangulating from multiple angles to build confidence in your conclusions.

Closing thoughts

Instrumental variables are powerful tools for causal inference when experiments aren't feasible, but they're not magic bullets. They require strong assumptions, clever thinking, and honest assessment of limitations.

The best practitioners use IVs as one tool among many, combining them with natural experiments, regression discontinuity designs, and yes, good old randomized tests when possible. Tools like Statsig make it easier to run those randomized tests when you can, which honestly should be your first choice. But when you can't? That's when understanding techniques like instrumental variables becomes invaluable.

Want to dive deeper? Check out Angrist and Pischke's "Mostly Harmless Econometrics" for the econometric foundations, or explore the latest research on machine learning approaches to instrument selection. The causal inference community on Twitter is also surprisingly active and helpful.

Hope you find this useful!

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